Beware of pirates...or pirates beware.

Somali pirates attempted to storm the French navy's 18,000 tonne flagship in the Indian Ocean after mistaking it for a cargo vessel, the French military said on Wednesday.

The crew of La Somme, a 160-metre (525-foot) command vessel and fuel tanker, easily saw off the brazen night-time assault by lightly armed fighters on two lightweight skiffs and captured five pirates, a spokesman said.

"The pirates, who because of the darkness took the French ship for a commercial vessel, were on board two vessels and opened fire with Kalashnikovs," Admiral Christophe Prazuck said in Paris.

La Somme is the French command vessel in the Indian Ocean, overseeing French air, sea and land forces fighting Somali pirates and hunting terrorists under the banner of the US-led Operation Enduring Freedom.

Officers on the ship have directed commando operations to free French hostages in the hands of Somali pirates.

The pirates tried to flee when they realised their mistake but were pursued by French forces who, after an hour-long chase, caught one of the skiffs, Prazuck said.

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The should have blown both boats out of the water.

Now they will have a trial and have to feed and clothe them for the next 20 years or so.